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Sequence Assembler : PaDeNA always returns contigs even if it runs by enabling Scaffold generation checkBox.
PaDeNA always returns contigs even if it runs by clicking Scaffold generation checkBox.
It doesn't return scaffold sequences. Should return scaffold sequence.
1. Open sequence assembler
2. Load sequence reads.
3. Click on Assemble button, select PaDeNA.
4. Check Scaffold Generation checkbox.
5. Assemble sequence
(Run PaDeNA for the reads attached in this bug with parameters
Kmer :6,DanglingThreshold:3,RedundantThreshold -7,Redundancy :1,Depth -3.
Actual result : PaDeNA returns Contigs not scaffolds.
PaDeNa returns following contigs if it runs with or without enabling scaffold generation checkBox for the attached file
Expected result : PaDeNA should return proper scffold sequences if it runs by enabling Scaffold generation checkbox.