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verify NUCmer alignment results

description

verify that the results of a NUCmer alignment are correct. Do a multiple alignment on 4 sequences. You will receive 3 actual alignment objects containing an AlignedSequence object and a list of two Sequences (the sequences that generated the alignment). It's the list of two Sequences that do not seem to be correct. After alignment the sequence list looks like:

seq1
seq1

seq1
seq2

seq1
seq3

but should look like (I think):

seq1
seq2

seq1
seq3

seq1
seq4

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