Padenautil FASTQ support


The Padena algorithm supports FASTQ assembly (insofar as it needs only bases and makes no use of quality values) but it seems that PadenaUtil does not. We do have a parser for FASTQ.


sjmercer wrote Aug 17, 2011 at 10:31 PM

Agreed. Since MBF also parses BAM and SAM formats as well, it would make the most sense to modify PadenaUtil to automatically detect file type and invoke the appropriate parser, supporting FASTA, FASTQ (all types), BAM and SAM.

wrote Feb 13, 2013 at 8:43 PM